Detailed information of SNP:
|
SNP ID:
sf1202413716(Gbrowse)
Chromosome: chr12 Position: 2413716 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.37% | 43.63% |
| All Indica | 794 | 92.70% | 7.30% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202413716 | G->A | INTERGENIC | None |