Detailed information of SNP:
|
SNP ID:
sf1202541329(Gbrowse)
Chromosome: chr12 Position: 2541329 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 50.32% | 49.68% |
| All Indica | 787 | 13.85% | 86.15% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 8.47% | 91.53% |
| Indica II | 211 | 19.43% | 80.57% |
| Indica Intermediate | 210 | 17.62% | 82.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202541329 | G->A | INTERGENIC | None |