Detailed information of SNP:
|
SNP ID:
sf1202551739(Gbrowse)
Chromosome: chr12 Position: 2551739 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.94% | 45.06% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202551739 | T->C | INTERGENIC | None |