Detailed information of SNP:
|
SNP ID:
sf1202556974(Gbrowse)
Chromosome: chr12 Position: 2556974 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.46% | 41.54% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202556974 | T->C | LOC_Os12g05570(LOC_Os12g05570.1) | Non-Synonymous SNP |