Detailed information of SNP:
|
SNP ID:
sf1202572799(Gbrowse)
Chromosome: chr12 Position: 2572799 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1286 | 96.11% | 3.89% |
| All Indica | 674 | 92.73% | 7.27% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 84.29% | 15.71% |
| Indica II | 180 | 100.00% | 0.00% |
| Indica Intermediate | 182 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202572799 | C->G | LOC_Os12g05600(LOC_Os12g05600.1) | UTR_3_PRIME |