Detailed information of SNP:
SNP ID:
sf1202572799(Gbrowse)
Chromosome: chr12 Position: 2572799 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1286 | 96.11% | 3.89% |
All Indica | 674 | 92.73% | 7.27% |
All Japonica | 493 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 312 | 84.29% | 15.71% |
Indica II | 180 | 100.00% | 0.00% |
Indica Intermediate | 182 | 100.00% | 0.00% |
Temperate Japonica | 333 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 66 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1202572799 | C->G | LOC_Os12g05600(LOC_Os12g05600.1) | UTR_3_PRIME |