Detailed information of SNP:
|
SNP ID:
sf1202573326(Gbrowse)
Chromosome: chr12 Position: 2573326 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 93.95% | 6.05% |
| All Indica | 790 | 91.39% | 8.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 205 | 76.10% | 23.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202573326 | G->C | INTERGENIC | None |