Detailed information of SNP:
|
SNP ID:
sf1202575539(Gbrowse)
Chromosome: chr12 Position: 2575539 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.32% | 12.68% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202575539 | A->G | INTERGENIC | None |