Detailed information of SNP:
|
SNP ID:
sf1202579540(Gbrowse)
Chromosome: chr12 Position: 2579540 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.75% | 13.25% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202579540 | G->A | INTERGENIC | None |