Detailed information of SNP:
|
SNP ID:
sf1202613242(Gbrowse)
Chromosome: chr12 Position: 2613242 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.04% | 7.96% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202613242 | A->C | INTERGENIC | None |