Detailed information of SNP:
|
SNP ID:
sf1202637556(Gbrowse)
Chromosome: chr12 Position: 2637556 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 93.35% | 6.65% |
| All Indica | 797 | 92.72% | 7.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 50.00% | 50.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202637556 | A->G | INTERGENIC | None |