Detailed information of SNP:
|
SNP ID:
sf1202673749(Gbrowse)
Chromosome: chr12 Position: 2673749 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.70% | 9.30% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202673749 | G->T | INTERGENIC | None |