Detailed information of SNP:
|
SNP ID:
sf1202731212(Gbrowse)
Chromosome: chr12 Position: 2731212 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.94% | 6.06% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202731212 | T->C | INTERGENIC | None |