Detailed information of SNP:
|
SNP ID:
sf1202735325(Gbrowse)
Chromosome: chr12 Position: 2735325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.78% | 49.22% |
| All Indica | 795 | 79.87% | 20.13% |
| All Japonica | 497 | 11.47% | 88.53% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202735325 | G->A | INTERGENIC | None |