Detailed information of SNP:
|
SNP ID:
sf1202742449(Gbrowse)
Chromosome: chr12 Position: 2742449 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 94.93% | 5.07% |
| All Indica | 780 | 97.95% | 2.05% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202742449 | A->G | INTERGENIC | None |