Detailed information of SNP:
|
SNP ID:
sf1202742492(Gbrowse)
Chromosome: chr12 Position: 2742492 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 94.56% | 5.44% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 49 | 51.02% | 48.98% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202742492 | T->C | INTERGENIC | None |