Detailed information of SNP:
|
SNP ID:
sf1202804820(Gbrowse)
Chromosome: chr12 Position: 2804820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1222 | 96.32% | 3.68% |
| All Indica | 684 | 93.57% | 6.43% |
| All Japonica | 421 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 87.82% | 12.18% |
| Indica II | 187 | 99.47% | 0.53% |
| Indica Intermediate | 185 | 97.30% | 2.70% |
| Temperate Japonica | 284 | 100.00% | 0.00% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202804820 | C->T | INTERGENIC | None |