Detailed information of SNP:
|
SNP ID:
sf1202864167(Gbrowse)
Chromosome: chr12 Position: 2864167 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.58% | 11.42% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202864167 | A->C | INTERGENIC | None |