Detailed information of SNP:
|
SNP ID:
sf1202875470(Gbrowse)
Chromosome: chr12 Position: 2875470 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.68% | 13.32% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202875470 | T->C | INTERGENIC | None |