Detailed information of SNP:
|
SNP ID:
sf1202887109(Gbrowse)
Chromosome: chr12 Position: 2887109 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 78.64% | 21.36% |
| All Indica | 795 | 72.58% | 27.42% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202887109 | A->G | INTERGENIC | None |