Detailed information of SNP:
SNP ID:
sf1202907438(Gbrowse)
Chromosome: chr12 Position: 2907438 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 96.48% | 3.52% |
All Indica | 799 | 99.12% | 0.88% |
All Japonica | 497 | 98.99% | 1.01% |
Aus | 67 | 55.22% | 44.78% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1202907438 | G->A | INTERGENIC | None |