Detailed information of SNP:
|
SNP ID:
sf1202917789(Gbrowse)
Chromosome: chr12 Position: 2917789 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1253 | 52.59% | 47.41% |
| All Indica | 758 | 53.17% | 46.83% |
| All Japonica | 382 | 61.26% | 38.74% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 346 | 60.98% | 39.02% |
| Indica II | 208 | 32.69% | 67.31% |
| Indica Intermediate | 204 | 60.78% | 39.22% |
| Temperate Japonica | 254 | 73.62% | 26.38% |
| Tropical Japonica | 71 | 14.08% | 85.92% |
| Japonica Intermediate | 57 | 64.91% | 35.09% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 33 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202917789 | A->G | INTERGENIC | None |