Detailed information of SNP:
|
SNP ID:
sf1202999074(Gbrowse)
Chromosome: chr12 Position: 2999074 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 87.76% | 12.24% |
| All Indica | 772 | 78.76% | 21.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 358 | 95.53% | 4.47% |
| Indica II | 207 | 45.41% | 54.59% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202999074 | G->A | INTERGENIC | None |