Detailed information of SNP:
|
SNP ID:
sf1203004114(Gbrowse)
Chromosome: chr12 Position: 3004114 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.49% | 10.51% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203004114 | T->A | INTERGENIC | None |