Detailed information of SNP:
|
SNP ID:
sf1203005747(Gbrowse)
Chromosome: chr12 Position: 3005747 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 86.33% | 13.67% |
| All Indica | 794 | 85.26% | 14.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 4.62% | 95.38% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203005747 | T->C | INTERGENIC | None |