Detailed information of SNP:
|
SNP ID:
sf1203010973(Gbrowse)
Chromosome: chr12 Position: 3010973 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.44% | 12.56% |
| All Indica | 798 | 86.09% | 13.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203010973 | G->A | INTERGENIC | None |