Detailed information of SNP:
|
SNP ID:
sf1203044017(Gbrowse)
Chromosome: chr12 Position: 3044017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 91.60% | 8.40% |
| All Indica | 778 | 99.74% | 0.26% |
| All Japonica | 445 | 75.06% | 24.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 310 | 65.81% | 34.19% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203044017 | G->A | LOC_Os12g06350(LOC_Os12g06350.1) | INTRON |