Detailed information of SNP:
|
SNP ID:
sf1203149144(Gbrowse)
Chromosome: chr12 Position: 3149144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 97.65% | 2.35% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 410 | 93.17% | 6.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 278 | 96.76% | 3.24% |
| Tropical Japonica | 79 | 97.47% | 2.53% |
| Japonica Intermediate | 53 | 67.92% | 32.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203149144 | G->A | INTERGENIC | None |