Detailed information of SNP:
|
SNP ID:
sf1203198241(Gbrowse)
Chromosome: chr12 Position: 3198241 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 93.21% | 6.79% |
| All Indica | 738 | 91.87% | 8.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 42 | 35.71% | 64.29% |
| Indica I | 350 | 90.00% | 10.00% |
| Indica II | 192 | 95.83% | 4.17% |
| Indica Intermediate | 196 | 91.33% | 8.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203198241 | G->T | LOC_Os12g06600(LOC_Os12g06600.1) | INTRON |