Detailed information of SNP:
|
SNP ID:
sf1203198367(Gbrowse)
Chromosome: chr12 Position: 3198367 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 62.01% | 37.99% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203198367 | C->T | LOC_Os12g06600(LOC_Os12g06600.1) | INTRON |