Detailed information of SNP:
|
SNP ID:
sf1203244780(Gbrowse)
Chromosome: chr12 Position: 3244780 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1213 | 91.43% | 8.57% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 307 | 67.43% | 32.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 190 | 65.26% | 34.74% |
| Tropical Japonica | 74 | 91.89% | 8.11% |
| Japonica Intermediate | 43 | 34.88% | 65.12% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203244780 | T->A | INTERGENIC | None |