Detailed information of SNP:
|
SNP ID:
sf1203254844(Gbrowse)
Chromosome: chr12 Position: 3254844 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 96.73% | 3.27% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 424 | 89.86% | 10.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 91.67% | 8.33% |
| Tropical Japonica | 77 | 97.40% | 2.60% |
| Japonica Intermediate | 59 | 71.19% | 28.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203254844 | C->T | LOC_Os12g06680(LOC_Os12g06680.1) | INTRON |