Detailed information of SNP:
|
SNP ID:
sf1203259508(Gbrowse)
Chromosome: chr12 Position: 3259508 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 59.97% | 40.03% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203259508 | A->G | LOC_Os12g06690(LOC_Os12g06690.1) | INTRON |