Detailed information of SNP:
|
SNP ID:
sf1203267829(Gbrowse)
Chromosome: chr12 Position: 3267829 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 81.16% | 18.84% |
| All Indica | 733 | 69.58% | 30.42% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 354 | 67.23% | 32.77% |
| Indica II | 185 | 82.16% | 17.84% |
| Indica Intermediate | 194 | 61.86% | 38.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203267829 | A->G | LOC_Os12g06720(LOC_Os12g06720.1) | Synonymous |