Detailed information of SNP:
|
SNP ID:
sf1203288463(Gbrowse)
Chromosome: chr12 Position: 3288463 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.40% | 18.60% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203288463 | C->T | LOC_Os12g06770(LOC_Os12g06770.1) | INTRON |