Detailed information of SNP:
|
SNP ID:
sf1203325247(Gbrowse)
Chromosome: chr12 Position: 3325247 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 98.45% | 1.55% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203325247 | C->A | LOC_Os12g06850(LOC_Os12g06850.1) | Non-Synonymous SNP |
| sf1203325247 | C->A | LOC_Os12g06850(LOC_Os12g06850.3) | Non-Synonymous SNP |
| sf1203325247 | C->A | LOC_Os12g06850(LOC_Os12g06850.2) | UTR_3_PRIME |