Detailed information of SNP:
|
SNP ID:
sf1203345571(Gbrowse)
Chromosome: chr12 Position: 3345571 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1226 | 98.94% | 1.06% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 314 | 95.86% | 4.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 200 | 97.00% | 3.00% |
| Tropical Japonica | 70 | 98.57% | 1.43% |
| Japonica Intermediate | 44 | 86.36% | 13.64% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203345571 | G->A | INTERGENIC | None |