Detailed information of SNP:
|
SNP ID:
sf1203436430(Gbrowse)
Chromosome: chr12 Position: 3436430 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 88.77% | 11.23% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 427 | 75.41% | 24.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 279 | 64.87% | 35.13% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203436430 | A->T | LOC_Os12g07030(LOC_Os12g07030.1) | UTR_3_PRIME |