Detailed information of SNP:
|
SNP ID:
sf1203448282(Gbrowse)
Chromosome: chr12 Position: 3448282 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 90.09% | 9.91% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 444 | 70.72% | 29.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 58.45% | 41.55% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203448282 | C->A | INTERGENIC | None |