Detailed information of SNP:
|
SNP ID:
sf1203472350(Gbrowse)
Chromosome: chr12 Position: 3472350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1219 | 94.75% | 5.25% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 308 | 80.52% | 19.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 199 | 72.86% | 27.14% |
| Tropical Japonica | 65 | 100.00% | 0.00% |
| Japonica Intermediate | 44 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203472350 | C->T | INTERGENIC | None |