Detailed information of SNP:
|
SNP ID:
sf1203473916(Gbrowse)
Chromosome: chr12 Position: 3473916 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.37% | 47.63% |
| All Indica | 797 | 87.58% | 12.42% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203473916 | A->G | INTERGENIC | None |