Detailed information of SNP:
|
SNP ID:
sf1203500264(Gbrowse)
Chromosome: chr12 Position: 3500264 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.49% | 34.51% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203500264 | A->G | LOC_Os12g07140(LOC_Os12g07140.2) | INTRON |
| sf1203500264 | A->G | LOC_Os12g07140(LOC_Os12g07140.1) | UTR_3_PRIME |