Detailed information of SNP:
|
SNP ID:
sf1203576726(Gbrowse)
Chromosome: chr12 Position: 3576726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.84% | 9.16% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203576726 | C->T | INTERGENIC | None |