Detailed information of SNP:



SNP ID: sf1203576726(Gbrowse)

Chromosome: chr12

Position: 3576726
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 90.84% 9.16%
All Indica799 87.73% 12.27%
All Japonica497 99.20% 0.80%
Aus67 64.18% 35.82%
Indica I375 93.60% 6.40%
Indica II213 80.75% 19.25%
Indica Intermediate211 84.36% 15.64%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1203576726 C->T INTERGENIC None