Detailed information of SNP:
|
SNP ID:
sf1203602276(Gbrowse)
Chromosome: chr12 Position: 3602276 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.46% | 24.54% |
| All Indica | 798 | 64.79% | 35.21% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203602276 | G->T | LOC_Os12g07310(LOC_Os12g07310.1) | INTRON |