Detailed information of SNP:
|
SNP ID:
sf1203605222(Gbrowse)
Chromosome: chr12 Position: 3605222 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 86.15% | 13.85% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 473 | 60.68% | 39.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 57.10% | 42.90% |
| Tropical Japonica | 86 | 88.37% | 11.63% |
| Japonica Intermediate | 63 | 41.27% | 58.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203605222 | A->G | INTERGENIC | None |