Detailed information of SNP:
|
SNP ID:
sf1203609577(Gbrowse)
Chromosome: chr12 Position: 3609577 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 82.68% | 17.32% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 482 | 54.15% | 45.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 52.60% | 47.40% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 63 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203609577 | C->A | INTERGENIC | None |