Detailed information of SNP:
|
SNP ID:
sf1203610722(Gbrowse)
Chromosome: chr12 Position: 3610722 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.42% | 46.58% |
| All Indica | 799 | 22.90% | 77.10% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 5.60% | 94.40% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 15.64% | 84.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203610722 | C->A | LOC_Os12g07340(LOC_Os12g07340.1) | INTRON |