Detailed information of SNP:
|
SNP ID:
sf1203610891(Gbrowse)
Chromosome: chr12 Position: 3610891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.55% | 14.45% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203610891 | C->T | LOC_Os12g07340(LOC_Os12g07340.1) | INTRON |