Detailed information of SNP:
|
SNP ID:
sf1203617565(Gbrowse)
Chromosome: chr12 Position: 3617565 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 78.19% | 21.81% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 492 | 45.33% | 54.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 332 | 42.17% | 57.83% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203617565 | G->A | INTERGENIC | None |