Detailed information of SNP:
|
SNP ID:
sf1203637197(Gbrowse)
Chromosome: chr12 Position: 3637197 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 78.03% | 21.97% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 491 | 44.20% | 55.80% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 40.79% | 59.21% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203637197 | T->A | INTERGENIC | None |