Detailed information of SNP:
|
SNP ID:
sf1203643488(Gbrowse)
Chromosome: chr12 Position: 3643488 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.84% | 46.16% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203643488 | C->A | LOC_Os12g07390(LOC_Os12g07390.1) | INTRON |